Comment on 'Twisted Protein Aggregates and Disease: The Stability of Sickle Hemoglobin Fibers'

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📝 Original Info

  • Title: Comment on ‘Twisted Protein Aggregates and Disease: The Stability of Sickle Hemoglobin Fibers’
  • ArXiv ID: 1002.2445
  • Date: 2010-02-15
  • Authors: 논문에 명시된 저자 정보가 제공되지 않았습니다. (원문에서는 “Comment on …” 형태로만 제시되어 저자 명단이 누락되어 있습니다.)

📝 Abstract

Aggregates of twisted protein fibers, such as sickle hemoglobin and actin, are important examples of biopolymers in which elastic interactions play a crucial role in determining the (metastable) bundle radii. Here, we present a corrected version of analysis on the stability of sickle hemoglobin fibers using the classic nucleation theory.

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Comment on "Twisted Protein Aggregates and Disease: The Stability of Sickle Hemoglobin Fibers"

In a recent paper [1] Turner et al constructed the free energy per unit volume, G, needed to create a fiber bundle, where G = F -ψ Λ , using continuum elasticity theory. Here F is the distortion free energy per unit volume of a bundle of radius R and pitch length Λ and ψ is a positive Lagrange multiplier that controls the pitch length. From G they predicted the physical properties of the fiber bundle, such as the equilibrium (metastable) bundle radius R c , where in the latter case they minimized G with respect to R. However, we believe their analysis is incorrect for two reasons, the first being the use of the free energy density, G, rather than the total free energy Ω, to determine R c . The second is their omission of the binding energy between fibers, which in classical nucleation theory of spherical droplets corresponds to the driving force for nucleation. We present a corrected version of their analysis below. Our approach is the same as that of Grason and Bruinsma [2], who determined the critical bundle size for aggregates of filamentous actin.

According to classical homogeneous nucleation theory [3,4], the critical “droplet” size corresponds to the minimum of the total free energy Ω = R 2 LG, which is significantly different from the energy density G. A simple example is the nucleation of a spherical droplet [3,4]. The analogous argument for the heterogeneous nucleation of the fiber bundle involves calculating the total free energy required to create this bundle from an aggregate of fibers of (fixed) length L.

The energy of a twisted fiber as a function of pitch Λ and radius R, includes the contributions from the surface tension, extension or compression, bending, twisting and binding:

where E is the extensional modulus, a the radius of a protofilament and L the fiber length. ψ is related to the twisting stiffness [1,2]. Equation 1 contains an additional term -R 2 due to the aggregation energy [3,4] between fibers that is not present in Turner et al. [1]. The equilibrium pitch is determined by ∂Ω ∂(πLΛ) | Λ=Λ * = 0, which reduces Ω to Ω(R;Λ * ) πL = 2γR-3 4/3 ψ 4/3

Using experimental values for HbS of a = 4nm, E = 51M P a, ψ = 3.5 × 10 -4 Jm -2 [1, 5], we find that Ω(R; Λ * ) has just a single peak for > 190Jm -3 (Fig. 1). R = 0 and R → ∞ correspond to the phases of the dispersed protofilaments and stable crystal structures, respectively. As decreases below this, a local minimum develops in Ω(R; Λ * ) whose position depends on and γ. The minimum critical bundle size R c occurs under the condition that Ω(R; Λ * )| Rc = 0, ∂Ω(R;Λ * )

( n m )

FIG. 1: (Color online) Plot of the free energy Ω(R; Λ * ) per unit length as a function of the fiber radius, R, using the experimental values for HbS given in the text for > 190Jm -3 (black), = 38Jm -3 (red), and = 10Jm -3 (green). One local minimum occurs at R = 11nm which corresponds to the (metastable) equilibrium radius of HbS when = 38Jm -3 , γ = 5.8µJm -2 .

Combining the estimate ≈ 38Jm -3 for HbS [5], this yields a value of R c = 11nm and γ = 5.8µJm -2 ( Fig. 1), which are consistent with experimental observations [1,5]. A further reduction in leads to a decreasing value of Ω(R c ; Λ * ) (Fig. 1). We also note that the torsional rigidity obtained by Turner et al is the same in our calculation and in agreement with experimental values. Finally, there always is an energy barrier for the transition from dispersed protofilaments to the metastable bundle phase, which is incorrectly predicted as a spontaneous process in reference [1].

Reference

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