Q-Bio-Mn
Evolving Boolean Networks with RNA Editing
Modeling the dynamics of hypoxia inducible factor-1{alpha} (HIF-1{alpha}) within single cells and 3D cell culture systems
ComPPI, a cellular compartment-specific database for protein-protein interaction network analysis
Greatwall-phosphorylated Endosulfine is Both an Inhibitor and a Substrate of PP2A-B55 Heterotrimers
mRNA-miRNA Reciprocal Regulation Enabled Bistable Switch Directs Cell Fate Decision
Can bio-inspired information processing steps be realized as synthetic biochemical processes?
Gene-based and semantic structure of the Gene Ontology as a complex network
Known Structure, Unknown Function: An Inquiry-based Undergraduate Biochemistry Laboratory Course
A formal model of autocatalytic sets emerging in an RNA replicator system
PyNetMet: Python tools for efficient work with networks and metabolic models
Automation on the generation of genome scale metabolic models
Transfer Functions for Protein Signal Transduction: Application to a Model of Striatal Neural Plasticity
Network analysis reveals a potentially evil alliance of opportunistic pathogens inhibited by a cooperative network in human milk bacterial communities
A network inference method for large-scale unsupervised identification of novel drug-drug interactions
Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer
Dynamics on Networks of Manifolds
Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification
Achieving Diverse and Monoallelic Olfactory Receptor Selection Through Dual-Objective Optimization Design
Epigenetic landscapes explain partially reprogrammed cells and identify key reprogramming genes
Gene autoregulation via intronic microRNAs and its functions
Digital clocks: simple Boolean models can quantitatively describe circadian systems
RNA interference and Register Machines (extended abstract)
