Q-Bio-Mn
Boolean Threshold Networks: Virtues and Limitations for Biological Modeling
Complementary approaches to understanding the plant circadian clock
Biochemical Filter with Sigmoidal Response: Increasing the Complexity of Biomolecular Logic
An introduction to spectral distances in networks (extended version)
Mutual information in time-varying biochemical systems
Switching in mass action networks based on linear inequalities
Density-based modeling and identification of biochemical networks in cell populations
Morphogenesis by coupled regulatory networks: Reliable control of positional information and proportion regulation
Network-based confidence scoring system for genome-scale metabolic reconstructions
Effects of the DNA state fluctuation on single-cell dynamics of self-regulating gene
CplexA: a Mathematica package to study macromolecular-assembly control of gene expression
Theoretical analyses predict A20 regulates period of NF-kB oscillation
Network Archaeology: Uncovering Ancient Networks from Present-day Interactions
On the role of conserved moieties in shaping the robustness and production capabilities of reaction networks
Long delay times in reaction rates increase intrinsic fluctuations
Adaptive gene regulatory networks
Network motifs come in sets: correlations in the randomization process
Stochastic Network Model of Receptor Cross-Talk Predicts Anti-Angiogenic Effects
Networks of motifs from sequences of symbols
The Stability of Boolean Networks with Generalized Canalizing Rules
Cost and Capacity of Signaling in the Escherichia coli Protein Reaction Network
Extremely chaotic Boolean networks
