Q-Bio-Mn
TinkerCell: Modular CAD Tool for Synthetic Biology
Modularity and anti-modularity in networks with arbitrary degree distribution
Chaperones as integrators of cellular networks: Changes of cellular integrity in stress and diseases
Fundamental Dynamic Units: Feedforward Networks and Adjustable Gates
Generating functional analysis of complex formation and dissociation in large protein interaction networks
Spectral solutions to stochastic models of gene expression with bursts and regulation
A model for signal transduction during quorum sensing in emph{Vibrio harveyi}
Signatures of arithmetic simplicity in metabolic network architecture
Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments
Optimal flux states, reaction replaceability and response to knockouts in the human red blood cell
Cis-Regulatory Modules Drive Dynamic Patterns of a Multicellular System
Genome-Wide Survey of MicroRNA - Transcription Factor Feed-Forward Regulatory Circuits in Human
Proteins with greater influence on network dynamics evolve more slowly but are not more essential
Emergent thresholds in genetic regulatory networks: Protein patterning in Drosophila morphogenesis
Pitchfork and Hopf bifurcation thresholds in stochastic equations with delayed feedback
Noise Characteristics of Molecular Oscillations in Simple Genetic Oscillatory Systems
Network Structure of Protein Folding Pathways
Determinants of bistability in induction of the Escherichia coli lac operon
From differential equations to Boolean networks: A Case Study in modeling regulatory networks
The effect of negative feedback loops on the dynamics of Boolean networks
Random matrix analysis of localization properties of Gene co-expression network
Comment on Yu et al., "High Quality Binary Protein Interaction Map of the Yeast Interactome Network." Science 322, 104 (2008)
